BioLab: learning, training and connecting

BioLab Lead image

BioLab at OICR manages state-of-art equipment for translational cancer research and offers free educational seminars, advanced technology workshops and hands-on instrument training sessions led by instrument application specialists.

The mission of BioLab is to provide continuous education and training for the next generation of Ontario cancer researchers using existing and advanced cancer-related technologies, applications, tools and instrumentation.

BioLab Provides

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BioLab goes beyond basic theory and training to provide application-driven experiences. BioLab training explores the full potential of state-of-art cancer research equipment from experimental design, through correct equipment usage and even covers project-driven applications.

The training sessions offered by BioLab foster collaboration in the cancer research community and provide a place to share experiences, build new collaborations and drive cancer research forward.

BioLab-Hub

To address the COVID-19 pandemic, BioLab has extended its educational offerings by launching the BioLab-Hub initiative to better assist BioLab users.

BioLab-Hub posts a selection of free webinars on cancer-related technologies and research innovations, and a monthly topic-driven, view-and-learn collection of curated technical resources on new technologies, instrumentation, applications, and protocols related to cancer research (Read More).

To keep abreast of BioLab-Hub news, please subscribe to our mailing list https://lists.oicr.on.ca/mailman/listinfo/biolab (for OICR staff), https://lists.oicr.on.ca/mailman/listinfo/biolab-global (external users).

To help us tailor the BioLab-Hub initiative to suit your research interests, please send your ideas, suggestions, links, and webinars to vanya.peltekova@oicr.on.ca.

Read a message from the Lead about how BioLab is adapting to the COVID-19 pandemic [PDF]

Upcoming training sessions from the community

Target 2035 Webinar: Computational and AI methods for ligand discovery and optimization
January 11, 2021 | 10:00 a.m. EDT | Register Here

Abstract: Target 2035 is an international federation of biomedical scientists from the public and private sectors developing and applying new technologies to create by year 2035 chemogenomic libraries, chemical probes, and/or biological probes for the entire proteome (Carter, A.J. et al. Target 2035: probing the human proteome, Drug Discov Today (2019). 

This webinar will discuss the computational and AI methods for generation chemical and biological reagents for the understudied proteins that will enable research and lead to the validation of novel therapeutic targets, and the discovery of better medicines.


How T Cells Fight SARS-CoV-2
January 12, 2021 | 2:30 p.m. EDT | Register Here

Abstract: Many immunologists are looking at T cells to understand the potential for lasting immunity to SARS-CoV-2. In this webinar from The Scientist, Alessandro Sette and Shane Crotty will present the latest findings in T cell function following SARS-CoV-2 infection and the implications for vaccine development and lasting immune memory.


The Inhibitory Role of Specific Macrophages in RCC
January 19, 2021 | 11:00 a.m. EDT | Register Here

Abstract: Only a small subset of patients with clear cell Renal Cell Carcinoma (ccRCC) respond to immunotherapy with checkpoint inhibitors. Research has shown that additional mechanisms of inhibition prevent the majority of patients from successful treatment. Recent studies on the inhibitory role of macrophages portend that these cells are associated with lower survival rate in several different cancer types. The webinar,will present research on specific macrophages in RCC (“ercDCs”) which are associated with poor outcome and their potential as new targets in immunotherapy.


Sample preparation and enrichment for single-cell sequencing assays
January 20, 2020 | 11:00 a.m. EDT | Register Here

Abstract: Single-cell RNA sequencing (scRNA seq) has emerged as a powerful tool that can reveal complex and rare cell populations, uncover regulatory relationships between genes, and trace connections between cellular lineages in different cell types and rare populations. The high sensitivity of scRNA seq requires careful processing of the sample to ensure optimal results. 

This webinar will discuss the basics of sample preparation, sample cleanup and enrichment methods to obtain quality data from single-cell sequencing assays.


Combinatorial Immunotherapy Approaches for Patients with Advanced Solid Tumors
January 21, 2021  | 11:00 a.m. EDT | Register Here

Abstract: This GEN webinar, sponsored by Ultivue, we will explore the intratumoral administration of autologous, non-manipulated myeloid dendritic cells in combination with immune checkpoint inhibitors in patients with advanced solid tumors and in combination with the oncolytic virus talimogene laherparepvec (Imlygic®) in patients with advanced melanoma in phase | clinical trials.  


Launch of ICON™ and STUDIUS™ – New Products for an Integrated Cell Line Development Workflow
January 25, 2021  | 11:00 a.m. EDT | Register Here

Abstract: From the original notion of monoclonal antibodies as “magic bullets” right through to the latest generation of COVID-19 vaccines, stem cell therapies and exosomes, cell line development is experiencing a rapid expansion in both scope and output of novel biotherapeutics. Clonality, and the gathering of quality evidence, has been central to cell line development for the last decade, and with it, driving the rise of high-caliber seeding and imaging technologies.

In this webinar, market leader Solentim will introduce two new products, an instrument named ICON™, that is designed to empower laboratories to make better decisions faster, and an over-arching software platform called STUDIUS™.


High-throughput CRISPR editing using the Onyx™ platform identifies essential residues in proteins
January 26, 2020 | 11:00 a.m. EDT | Register Here

Abstract: Over the past years, CRISPR/Cas genome editing has quickly become the method of choice for genetic manipulation, owing to its ease-of-use, flexibility, and efficiency. However, another main advantage of CRISPR technology is its scalability. In the study presented during this webinar, we used the high-throughput CRISPR-based Onyx platform to perform saturation mutagenesis to probe the essentiality of different residues. 

On demand training sessions from the community

Adding Dimensions to Multiplex Molecular Imaging
On Demand | Register Here

Abstract: Molecular imaging of living specimens offers a means to draw upon the growing body of high-throughput molecular data to better understand the underlying cellular and molecular mechanisms of complex disease processes. 

Leica’s two-photon light-sheet microscope combines the deep penetration of two-photon microscopy and the speed of light sheet microscopy to generate images with more than ten-fold improved imaging speed and sensitivity.  


Troubleshooting Cell-based Assays – Avoid Common Pitfalls from Cell Seeding to Analysis
On Demand | Register Here

Abstract: The assessment of cell health and cellular responses after experimental manipulation continue to be a very important aspect of experimental biology. Despite choosing the appropriate assay type there are many more factors to be considered to mitigate data variability. This joined (Promega and Eppendorf) webinar offers a comprehensive overview of the cell culture workflow and introduces measures to maximize the outcome of your cell-based assay.


From Cell Seeding to Analysis – Getting the Best Out of Your Cell-based Assay
On Demand | Register Here

Abstract: The assessment of cell health and cellular responses after experimental manipulation continue to be a very important aspect of experimental biology. Reproducibility of cell-based assays is one of the key points when it comes to reliability of experimental data. 

In this webinar Eppendorf and Promega are joining forces to optimize your assay results and discuss measures for getting the best out of your cell-based assay. 


LABTalk: Strategies to Prevent Contamination in a Cell Culture Lab
On Demand | Register Here

Abstract: This webinar provides the strategies paramount to preventing contamination in a cell culture lab. Learn more about advance tips and tricks regarding cell culture.


10XGenomics: Single-Cell Multi-omics to Profile the Immune System
On Demand | Register Here

Abstract: Profiling the immune system of cancer patients at the single-cell level promises to uncover signatures of response and mechanisms of drug action. While single-cell technologies have developed at a rapid pace, applying them to large numbers of clinical samples remains challenging. Researchers had developed an integrated platform that enables high-quality analysis of single-cell multi-omics data on hundreds of PBMC samples from cancer patients. Using 10x Genomics technology and ML approaches to correct for sample heterogeneity and mitigate batch effects, this platform enables characterization of the transcriptome, cell surface proteins, and adaptive immune repertoire of large sample numbers at the single-cell level.


IsoPlexis: Fully Automated High-Plex Proteomics to Enable Accelerated Immune Medicine
On Demand | Register Here

Abstract: IsoPlexis is offering unique new high-plex automated immunoassay solutions to uniquely enable decentralization of multiplexed and fully automated functional proteomics for accelerated insights. This technology can identify 20-30 cytokines in bulk, with only 11 µL of sample per chip, analyzed on the fully automated, benchtop IsoLight system. IsoPlexis’ proteomics platform widens access to advanced insights provided by improved and re-engineered ELISA technology, with a small footprint and end-to-end automation.

Several speakers will describe how high-plex automated immunoassays facilitate critical discoveries in immune medicine.


Predicting COVID-19 Severity From Genetic and Other Biomarkers: A Virtual Roundtable Discussion
On Demand | Register Here

Abstract: The unfolding of the COVID-19 pandemic has shown that disease severity does not always correlate with age, pre existing medical conditions, or other clinical features. While some individuals can be infected with SARS-CoV-2 with few or no symptoms, others become severely ill with the disease.

This panel discussion explores a variety of ongoing research projects and approaches that aim to discover genetic and other biomarkers to help predict who is at risk of developing severe COVID-19.

The panelists discuss the opportunities and challenges of implementing their findings into clinical care, particularly within the context of other predictors of disease severity. 


Rapid WGS: How Rady Children’s Institute Is Increasing Diagnostic Yield and Improving Outcomes
On Demand | Register Here

Abstract: Rapid whole-genome sequencing (rWGS) is an emerging method that can provide molecular diagnosis in time to alter acute medical or surgical management and improve outcomes in acutely ill children. The clinical utility of rWGS depends on the ability to rapidly analyze and interpret large amounts of sequencing data. 

In this webinar, Dr. Stephen Kingsmore, President and CEO of Rady Children’s Institute for Genomic Medicine, gives an overview of the two-time world-record-setting Rady rWGS method, followed by a deeper examination of the institute’s analysis and interpretation pipeline by Dr. Katarzyna Ellsworth.


Designing and Executing a Successful Spatial Profiling Experiment
On Demand | Register Here

Abstract: NanoString’s GeoMx™ Digital Spatial Profiler* combines standard immunofluorescence techniques with digital optical barcoding technology to perform highly multiplexed, spatially resolved profiling experiments. In a single reaction, the DSP technology performs whole slide imaging with up to four fluorescent stains to capture tissue morphology and select regions of interest for high plex profiling. The DSP chemistry enables spatially resolved high plex profiling of RNA and protein targets on just two serial sample sections. 

This is a practical webinar on designing experiments for the GeoMx® Digital Spatial Profiler (DSP). During the webinar, you will review tips and tricks on the experimental design process and a review of several high impact case studies utilizing this technology


The Tumor Neighborhood Watch: How Spatial Architecture and Cellular Neighborhoods Correlate to Colorectal Cancer Outcomes
On Demand | Register Here

Abstract: Most recent single-cell and spatial biology studies have focused on the network of interactions between different cell types and their spatial context. 

Dr. Garry Nolan, Stanford University, in collaboration with the University of Bern has conducted deep single-cell phenotyping and spatial analysis on a cohort of colorectal cancer FFPE samples using the CODEX platform, Akoya Biosciences. As a result, the authors discovered nine distinct cellular neighborhoods, each uniquely composed of certain immune and cancer cell types. These cellular neighborhoods were found to interact with one another in a manner that correlated with disease progression and prognosis.


Past BioLab sessions

2020

  • Amnis® Multispectral Imaging Flow Cytometry for Single Cell Analysis: Tools and Applications
    January 28, 2020

2019

  • Virtual Reality (VR) in Cancer Imaging: Project Theia – Interactive VR Cancer Research Lab
    November 29, 2019
  • The Antibody Reproducibility Crisis
    October 17, 2019
  • Targeting Epigenetic Mechanisms: Challenges and Solutions
    October 15, 2019
  • BioTek’s Cytation Multi-Mode Cell Imager: Practical Applications for Imaging and Quantification of Cell-Based Assays
    September 18, 2019
  • Development and Implementation of Clinical Proteomics for Precision Oncology: Applications at the Bedside
    August 6, 2019 | [Watch on YouTube]
  • Magnetic 3D Bioprinting of Cells: an advance platform for developing tumor models for high throughput functional studies and drug screening
    July 24, 2019 | [Watch on YouTube]
  • Improving Communication through Visuals: 10 Tips for Better Science Figures
    July 11, 2019
  • Artificial Intelligence in Cancer Imaging: Bridging the Gap between Pathologist and Algorithm
    June 21, 2019 | [Watch on YouTube]
  • Live Cell Imaging with OkoLab BioStation and Leica SP8 Microscope
    May 30, 2019
  • IsoPlexis Single Cell Platform Links Functional Proteomics with Cancer Immunotherapy
    May 28, 2019
  • Oncomine Technology and Solutions for Utilization of Liquid Biopsy Assays in Cancer Research and Clinical Practice
    May 9, 2019
  • Confocal Laser Scanning Microscopy: Exploring Field of View and Mosaic Function to Assemble Single High-Resolution Images into a Large Super image
    April 24, 2019
  • MACSQuant® Tyto® Flow Cell Sorter for Multiparametric Cell Sorting Based on Microchip Technology for Sterile and Gentle Cell Isolation
    April 17, 2019
  • Confocal Laser Scanning Microscopy: Leica SP8 TCP Basics
    April 10, 2019
  • Smarter Medicine: Getting Started in Computational Pathology
    April 9, 2019 | [Download the slides]
  • Optimizing Ribonucleoprotein Delivery to Achieve Potent and Precise CRISPR/Cas9 genome editing
    March 27, 2019
  • Simultaneous Detection of Noncoding RNAs and Protein Cell Surface Markers from PBMC Subpopulations
    January 31 and February 1st, 2019
  • MaxCyte Flow Electroporation Technology: Choosing the Right Cell Engineering Technology from Discovery to Manufacturing
    January 29, 2019
  • Simultaneous Detection of mRNA transcripts and Proteins in Different Immune Cell Subsets
    January 22, 2019
  • Innovative Tools and Techniques for Isolation and Characterization of Cancer-Derived Exosomes (MACSPlex and MACSQuant)
    January 16, 2019

2018

  • Novel Automated Platforms for CRISPR-Engineered Cell Lines and Synthetic sgRNA for Primary Cell and Screening Applications
    November 29, 2018
  • PrimeFlow RNA Assay for simultaneous detection of RNA and Protein by Flow Cytometry
    November 8, 2018 | PowerPoint slides
  • Three-Dimensional Organoid Cultures as In Vitro Models for Cancer Research: Applications and Prospective
    October 24, 2018
  • Tools and Techniques for Isolation and Multi-Plex Analysis of Cancer-Derived Exosomes via Flow Cytometry
    October 10, 2018
  • The Moffitt Cancer Center approach to pathology diagnostics supporting the delivery of precision oncology and immune-oncology treatments
    October 16, 2018 | Video
  • Introduction to Multiphoton Microscopy and Fluorescent Lifetime Microscopy (FLIM)
    October 16, 2018
  • Basics of Confocal Laser Scanning Microscopy
    October 4, 2018
  • BioPlex 200 Analyzer: How to Use of xMAP Technology to Measure Complex Immune Responses
    September 10, 2018
  • Global Transcriptome Profiling for Better Biomarkers
    September 5, 2018
  • OkoLab BioStation for Live Cell Imaging by Leica SP8 Microscope
    August 1st, 2018
  • The Future of Diagnosis: Learning To Recognize Similar Images In Digital Pathology
    July 31, 2018
  • Computational Pathology Tools for Whole Slide Biomarker: ISH spot quantification at single cell resolution at the STTARR image analysis core facility
    July 19, 2018
  • OkoLab BioStation for Live Cell Imaging by Leica SP8 Microscope
    June 25, 2018
  • Circulating Tumor DNA (ctDNA): Detection and Applications in Curable Cancers
    June 11, 2018
  • Preparation of Single Cell Suspensions from Tissues for Cell RNA Sequencing by 10XGenomics
    May 7, 2018
  • Multiplexing and Applications of the QuantiGene™ Plex and ViewRNA™Assay in Cancer Research and Diagnostics
    May 2, 2018
  • Basics of Leica Laser TCS SP8 Confocal Microscopy
    April 24, 2018
  • Droplets for Cancer Detection in Liquid Biopsy
    April 19, 2018
  • Advancing Oncology Research with High Content Imaging and 3D Models: Technology and Application Overview
    April 5, 2018
  • MACS Technologies for Single Cell Omics: Methods for Sample Preparation, Cell Isolation and Single Cell Analysis for Cancer Research
    March 29, 2018
  • Quantitative Intracellular and Intra-Nuclear Spot Analysis Using Cytation-3 Digital Microscopy
    February 13, 2018
  • Visualize Gene Expression and Genetic Variations in Tumor Microenvironment: Applications of RNAscope and BaseScope ISH Technologies
    February 5, 2018

Leader

Dr. Vanya Peltekova PhD
Lead, BioLab Operations, Ontario Institute for Cancer Research
All inquiries can be addressed to Dr. Peltekova at vanya.peltekova@oicr.on.ca.


Seminars and workshops are for educational purposes only and are not an endorsement of any products or services by BioLab or by OICR.